1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctttacgcttttggaagacctagttctttgcctggtttcttgatttgaattatttgatgtaattttctccaggattgttaagttgaaattttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
species | Glycine max |
transcript | GLYMA12G04460.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTCCCTGACACTCCTAACCCCC-TGAAGGGATTCGAGCTCEST: gi|208161112|gb|GD961718.1|GD961718
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAA-CCTCCCCTCCCTGACACTCCEST: gi|57575734|gb|CX548709.1|CX548709
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCC
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCCTNCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTEST: gi|193342761|gb|FK309037.1|FK309037
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCT-CCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCT
EST: CTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTCCCTGACACTCCTAACCTCCCTGAAGGGATTCGAGCTCEST: gi|19053078|gb|BM731745.1|BM731745
genomic: CTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCEST: gi|193453091|gb|FK419007.1|FK419007
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCEST: gi|193419035|gb|FK382265.1|FK382265
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTEST: gi|57575553|gb|CX548528.1|CX548528
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCT
EST: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAG GAAAACCTCCCCTTCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
genomic: TGCTGCCTGGAAGAACCAAGCATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTC
tgaattatttgatgtaattttctccaggattgttaagttgaaattttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
atttgat putative branch site (score: 5)
ttttcatt putative PPT
tatttgatgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttacgcttttggaagacctagttctttgcctggtttcttgatttgaattatttgatgtaattttctccaggattgttaagttgaaattttcattacagGAAAACCTCCCCTCCCTGACACTCCTAACCCCCCTGAAGGGATTCGAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - gcttttg
- - - - - - - - - - - - -ctttgcc
- - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta