Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttccgtgctgcattgtgtgcgttatttgaactaatgtaacataactgattcatgttggctttctgctctctgcagTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGGCTAGCTCCTATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTT

Basic information

species Glycine max
transcript GLYMA12G01250.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01250.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------gtaatttccgtgctgcattgtgtgcgttatttgaactaatgtaacataactgattcatgttggctttctgctctctgcagTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGGCTAGCTCCTATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTT
                         ||      ||  | | | || | || |   ||| |   | | |||   | || |   |||  | | | || | |||||||||| |||||||| ||||||||||||||||| ||||| || || |||||||| |||||||||||||| || ||||| || || ||||||||||| ||  
atggtttgacaaaatatacttccacaaaagttatgaaggagtctgagggtaa---gaagtttggcatcatgtatcatcctgattgcttatattctttgtgcagTCAACTTCCAACCGAACTTTGGACCAGCAATGCACTGTTACACGTCCAGGGCTTGCTCCTATTGCTTCGGCTCTTGCTGTAGAGCTTTTAGTAGGAATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317615|gb|GR826599.1|GR826599
EST:     AACATAGATTGGGCTGTTATTTCTGCAATGATGTCGTGGCACCAACCGAT                         TCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGG-
genomic: AACATAGATTGGGCTGTTATTTCTGCAATGATGTCGTGGCACCAACCGATgtaatttccg ... ctctctgcagTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGG
EST: gi|254317616|gb|GR826600.1|GR826600
EST:     AACATAGATTGGGCTGTTA-TTCTGCAATGATGTCGTGGCACCAACCGAT                         TCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGG
genomic: AACATAGATTGGGCTGTTATTTCTGCAATGATGTCGTGGCACCAACCGATgtaatttccg ... ctctctgcagTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttgaactaatgtaacataactgattcatgttggctttctgctctctgcagTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGGCTAGCTCCTATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTT
                                      ctttctgctctctgc  CT-rich tract
           taatgtaa  TA-rich tract