1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...actgtaaaatgctatatagatcattaggtataattctttgtggcatcttgttggtattatttgctcctaacttaaatttaccttatcattgtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGAGAGAATATACTCTGCTATACTATACT
species | Glycine max |
transcript | GLYMA12G00790.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAG GTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTT--AAEST: gi|7692805|gb|AW760904.1|AW760904
genomic: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGgtaaatctct ... gtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
EST: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAG GTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAEST: gi|10847912|gb|BF071647.1|BF071647
genomic: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGgtaaatctct ... gtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
EST: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAG GTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAEST: gi|15287889|gb|BI471780.1|BI471780
genomic: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGgtaaatctct ... gtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
EST: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAG GTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAEST: gi|22929040|gb|BU546179.1|BU546179
genomic: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGgtaaatctct ... gtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
EST: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAG GTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
genomic: CGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGgtaaatctct ... gtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAA
tcttgttggtattatttgctcctaacttaaatttaccttatcattgtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGAGAGAATATACTCTGCTATACTATACT
tcctaac putative branch site (score: 1)
ttaaatttaccttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtaaaatgctatatagatcattaggtataattctttgtggcatcttgttggtattatttgctcctaacttaaatttaccttatcattgtatccacagGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGAGAGAATATACTCTGCTATACTATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA