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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgacttatgatatatatgttcattgcatcacattgatttattatattatctcttgatttttttcatatgctgatttttaagataatttttctcccatgtagATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAATG

Basic information

species Glycine max
transcript GLYMA11G20220.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193430674|gb|FK392402.1|FK392402
EST:     AAGCATTTGTAATTATTCAAATGCTAAAAG                         ATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGG
genomic: AAGCATTTGTAA-TA-TCAAATGCTAAAAGgttcgactta ... tcccatgtagATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctcttgatttttttcatatgctgatttttaagataatttttctcccatgtagATACACTGGAGTTTGGTTAATAAGTCGATGTGGGGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAATG
                     tgctgat  putative branch site (score: 3)
 tttttctcccatgt  putative PPT
 atttttttcatatgct  TA-rich tract