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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcgaagaaatttttctcaaattcaggctgcaacaacatcaattaaatgtcgtacacatgctgtatactagaatctattgtctatttgttttaactgctaattcactttccccctttttttttttaaattttcagCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAG

Basic information

species Glycine max
transcript GLYMA11G19660.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19660.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 11
gtaagtgttcgaagaaatttttctcaaattcaggctgcaacaacatcaattaaatgtcgtacacatgctgtatactagaatctattgt-ctatttgttttaactgctaattcactttccccctttttttttttaaattttcagCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAG
                               | ||| ||  ||    |   |  ||  | |   ||   |||     || ||| | |  | ||||| ||| |       ||  |||   || ||||  || ||   ||| ||||||||||| || ||  ||||||| || ||||| || |||||| |||||||||| ||||||| ||||
------------------------------tatgcttcaggaa----agcaaggtgaagcatctat-tcgtagttctgattctctggagcaatttgattttatc-----tttgcttattccattttgcttctt---tttccagCTTATGAAACCGGACATATTTGACTTCATTGAAAAGCATAACTTACACGATGCCATTCGTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518655|gb|BM187697.1|BM187697
EST:     TGTATGTAATCGATGAGCAATATGAGAAAGCCTTCTTGTTGTATGCTGAT                         CTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGAT
genomic: TGTATGTAATCGATGAGCAATATGAGAAAGCCTTCTTGTTGTATGCTGATgtaagtgttc ... aaattttcagCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatttgttttaactgctaattcactttccccctttttttttttaaattttcagCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAG
               tgctaat  putative branch site (score: 2)
                     ttcactttcccccttt  CT-rich tract
                                  tttttttttttaaatt  TA-rich tract