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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaagaaagaattcatgttaagctgagggtgctcactcctcaattctcaatacctggagttccactcctgtacttacccaagtgtcttacatgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGATGGGATTGTCACTTTCTATGATTCAACCAGCACAAAGCTTAACATTTATC

Basic information

species Glycine max
transcript GLYMA11G18710.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208268380|gb|GE067695.1|GE067695
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|151401231|gb|EV271045.1|EV271045
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGATGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|18733631|gb|BM527732.1|BM527732
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|213597888|gb|DB958269.1|DB958269
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|17400577|gb|BM177359.1|BM177359
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|58023069|gb|CX709810.1|CX709810
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|21993710|gb|BQ785238.1|BQ785238
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGA
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGA
EST: gi|10848066|gb|BF070623.1|BF070623
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|33388989|gb|CA852196.1|CA852196
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|254343175|gb|GR859337.1|GR859337
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|57574504|gb|CX547479.1|CX547479
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
EST: gi|12773221|gb|BG238148.1|BG238148
EST:     TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAG                         GAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT
genomic: TAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGgtattattgc ... atgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagaaagaattcatgttaagctgagggtgctcactcctcaattctcaatacctggagttccactcctgtacttacccaagtgtcttacatgtatgtagGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGATGGGATTGTCACTTTCTATGATTCAACCAGCACAAAGCTTAACATTTATC

gcaagaa
- - - - - - tcatgtt
- - - - - - - - - - - - gagggtg
- - - - - - - - - - - - - - - - - -ctcctca
- - - - - - - - - - - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtctt