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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattattatacacatcatattttttgcaattatcctgcatatgtgttttatgtttatgtgaatcttagccatcacattgtcaattgatctttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15900.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 3'ss of exon 11
gtttattatt-atacacatcatattttttgcaattatcctgcatatgtgttttatgtttatgt--gaatcttagccatcacattgtcaattgatctttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
||  || |||  ||  |||   | ||||      ||||     |   | ||  ||   | |||   | | | |||  | ||| ||| | |||| ||     ||||||||||| ||||||||||||||||||| |||||||| || ||
gtccataattcgtaatcatgcaagttttc-----tatctaatgttgttattcgatacctgtgttgaagtttcagctcttacactgttagttgacctgaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699170|gb|BW656185.1|BW656185
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|213613458|gb|DB974627.1|DB974627
EST:     GCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCATCTAG
genomic: GCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|7030287|gb|AW460070.1|AW460070
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGAGGAGTTTCAATTTATACAC                         GGGAAAATTGCTGACATGTATACTTCATTACAATCTTCTA
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTA
EST: gi|16995570|gb|BM084942.1|BM084942
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|31476129|gb|CD418157.1|CD418157
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|208119311|gb|GD914220.1|GD914220
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|254338024|gb|GR849656.1|GR849656
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|10255205|gb|BE822971.1|BE822971
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
EST: gi|254338023|gb|GR849655.1|GR849655
EST:     GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAG                         GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
genomic: GACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGgtttattatt ... ttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatgtttatgtgaatcttagccatcacattgtcaattgatctttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
                                    aattgat  putative branch site (score: 4)
                                          tcttt  CT-rich tract
     tgtttat  TA-rich tract