1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagctccttgtttccaaacatgcacacaaaatttagattattttgaataattggaataatgtatagattgtgtactactttttcttcccattttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTT
species | Glycine max |
transcript | GLYMA11G15470.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACAGTGACTTCTTTTGTACACTATTAGCAGCCTCACCTGGTGAT GAAGAGGATTGTGCATCCGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGEST: gi|254348098|gb|GR851777.1|GR851777
genomic: CCACAGTGAC-TCTTTTG-ACACTATTAGCAGCTTCACCTGGTGATgtgagtagct ... ttttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAG
EST: AAACTGCCACAGTGACTCTTTTGACACTATTAGCAGCTTCACCTGGTGAT GAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGEST: gi|31474848|gb|CD416876.1|CD416876
genomic: AAACTGCCACAGTGACTCTTTTGACACTATTAGCAGCTTCACCTGGTGATgtgagtagct ... ttttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAG
EST: CAACTGCCACAGTGACTCTTTTGACACTATTAGCAGCTTCACCTGGTGAT GAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGEST: gi|31464171|gb|CD406199.1|CD406199
genomic: AAACTGCCACAGTGACTCTTTTGACACTATTAGCAGCTTCACCTGGTGATgtgagtagct ... ttttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAG
EST: GCTTCACCTGGTGAT GAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAG
genomic: GCTTCACCTGGTGATgtgagtagct ... ttttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAG
aataattggaataatgtatagattgtgtactactttttcttcccattttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTT
tactactttttcttcc CT-rich tract
aataatgtatagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctccttgtttccaaacatgcacacaaaatttagattattttgaataattggaataatgtatagattgtgtactactttttcttcccattttctacagGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- -ctccttg
- - - - - - -ccaaaca
- - - - - - - - - - - cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg