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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgatttagttattcgaaatttggggttgttttcatggatgaaacaaaataagttaatgcatatatgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTG

Basic information

species Glycine max
transcript GLYMA11G15470.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208097628|gb|GD891781.1|GD891781
EST:     TTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: TTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
EST: gi|11687562|gb|BF595238.1|BF595238
EST:     AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
EST: gi|13789994|gb|BG652585.1|BG652585
EST:     AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
EST: gi|10232648|gb|BE801536.1|BE801536
EST:     AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: AGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
EST: gi|208321404|gb|GE118183.1|GE118183
EST:     TTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: TTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
EST: gi|193442955|gb|FK407847.1|FK407847
EST:     CCTTAGAACTGTTTGAAGATGATCAATCAACTTCT                         GTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT
genomic: CCTTAGAACTGTTTGAAGATGATCAATCAACTTCTgtaagtttga ... tgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggggttgttttcatggatgaaacaaaataagttaatgcatatatgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTG
                               agttaat  putative branch site (score: 4)
                         aaaataagttaatgca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttgatttagttattcgaaatttggggttgttttcatggatgaaacaaaataagttaatgcatatatgatgcccagGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA