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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatattacaatacatttgagtgctgacttttctgccaaatattaatatgtgttgatacttcattcttccagGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG

Basic information

species Glycine max
transcript GLYMA11G15010.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022132|gb|CX708873.1|CX708873
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attcttccagGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
EST: gi|22524339|gb|BU083150.1|BU083150
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attcttccagGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
EST: gi|209727387|gb|BW663697.1|BW663697
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attcttccagGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtgctgacttttctgccaaatattaatatgtgttgatacttcattcttccagGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAG
                                       tacttcattcttcc  CT-rich tract
                    aaatattaatatgtgt  TA-rich tract