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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctactcccctctgtttattaattattttctctaaatttctcctagacttttatgttttttaagggtgatatttcgactaatgtaaaatctcctaattacactttgcagCCCCGCATATTCATACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG

Basic information

species Glycine max
transcript GLYMA11G12610.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20497719|gb|BQ272649.1|BQ272649
EST:     GCGCTGTGAGCACATTGGCAAAGTTTGGTGCTGCTGCTGATGAATTAAAG                         CCCCGCATATTCATACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG
genomic: GTGCTGTGAGCACATTGGCAAAGTTTGGTGCTGCTGTTGATGAATTAAAGgtgctactcc ... cactttgcagCCCCGCATATTCATACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttttaagggtgatatttcgactaatgtaaaatctcctaattacactttgcagCCCCGCATATTCATACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG
                                    tcctaat  putative branch site (score: 2)
 taatgtaaaat  TA-rich tract