1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggttttaagctttttgaagagcttctttgcttggtttcttgatttgaattatttgatttaattttctccaggattgttaagttgaaattttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
species | Glycine max |
transcript | GLYMA11G12260.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|208118296|gb|GD920121.1|GD920121
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|193321721|gb|FK287327.1|FK287327
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAAACACCCCTGAAGGGATTCAAGCTEST: gi|208198503|gb|GD995538.1|GD995538
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAA-CACCCCTGAAGGGATTCAAGCT
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|193510644|gb|FK467142.1|FK467142
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: CGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|11687620|gb|BF595296.1|BF595296
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|6964407|gb|AW433100.1|AW433100
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|298172194|gb|HO021786.1|HO021786
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCEST: gi|58015266|gb|CX702008.1|CX702008
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
EST: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAG GAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
genomic: TGCTGCCTGGAAGAACCAAACATCACTCCAGAGGTCTCAAACTTCAAAAGgttaacaact ... ttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTC
tgaattatttgatttaattttctccaggattgttaagttgaaattttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
atttaat putative branch site (score: 4)
ttttcatt putative PPT
tatttgatttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttttaagctttttgaagagcttctttgcttggtttcttgatttgaattatttgatttaattttctccaggattgttaagttgaaattttcattacagGAACACCTCCCCTCCCTGACACTACAAACACCCCTGAAGGGATTCAAGCTCGGATTGTGGTAGCTCTAACTGTCTTCTTTATGACGCTGTTTACTCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - -gcttctt
- - - - - - - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - tgatttg