Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatatcttacttgtgtgctttttggtgtaagttcttattataacataacatgatttgcttgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 3'ss of exon 11
-----------gtatgttata----tcttacttgtgtgctttttggtgtaagttcttattataacataacatgatttgcttgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG
            ||||  ||     | |   |||     ||| ||  ||||  |   |||      |  | || ||| |||  ||||||||||||||||||||||||||| || ||  ||||||| ||||  |||| |   |    |  ||||
gtaggatacctttatgccattaccctttgggttgaactatttgtgtggtaaaattgaatttc--tttgtcttgttttactttggtagGTTGAAGCATTGTTTGAACTGATTAAAGGAATTATCAACGATTTGGATGAGCCGCAAGGTCTTGAG

upper sequence: GLYMA11G08390.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 12
gtatgttatatct-----tacttgt---gtgctttttggtgtaagttcttattataacataacatgatttgct-tgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG
|||||||   |||     |  ||||   || |||||  ||||     || || ||    |  ||  | ||| | | |||||||||| |||||||||||| | ||||| ||||||||||||||||  ||||||   | | ||||||||
gtatgtttcttctattgatgtttgttctgttcttttcagtgtcctccctaatcatg---tgccactacttgttctatgtagGTTGAGGCATTGTTTGAATTAATAAAAGGGCTTATCAAGGATTTGGATGGGGATCTTCATGATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347700|gb|FK313488.1|FK313488
EST:     TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAG                         GTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGG
genomic: TTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGgtatgttata ... gcttgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtgctttttggtgtaagttcttattataacataacatgatttgcttgtgtagGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGGATCCCTAATGATGAG
                                          tttgctt  CT-rich tract
                       ttattataacataaca  TA-rich tract