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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG

Basic information

species Glycine max
transcript GLYMA11G07910.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533498|gb|EH261631.1|EH261631
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|51343377|gb|CO984110.1|CO984110
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         C
genomic: TGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         C
genomic: TGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         C
genomic: TGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         C
genomic: TGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACAC
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         C
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... tttccagcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG
                                    tttttggcctttcc  CT-rich tract
 aaatagtgatgaaata  TA-rich tract