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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatctcttatttgcattgcagtgtttagtttggccttgatgtaacagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343377|gb|CO984110.1|CO984110
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|208154342|gb|GD955395.1|GD955395
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     TGGCTCAGATT                         CAGTAGGGGGATCGTTCCAGGAAGTAAATAACAGCAAACAGAGGGTGGA-T
genomic: TGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGT-TATT
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         CAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATT                         ---TAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA
genomic: TGATTTCAATTCTTACATTAAGTGCAACTTTGTTGTCTATGGCTCAGATTgtaagcaatc ... gcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatgtaaatttttgttgtgaaatagtgatgaaatatatttttggcctttccagCAGTAGGGGGATCTTTCCAGGAAGTAAATAACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG
                                       tttttggcctttcc  CT-rich tract
                     aaatagtgatgaaata  TA-rich tract