1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtaataatgatttggtggagagaaagacacaaaaaaagatgtataaatcgttgtatgaattattgcatgtgcatcacatttctttctgaaatgatgcagGACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTACATTGGTTCTAGGAATATCAGCCTTAGGAATATTCTTAATTTGGAAAAAA
species | Glycine max |
transcript | GLYMA11G05490.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCGGAAGTTACAAGTTACTTGAGTGGAATGCTGAGCCTCCACTGAAACG GACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTACEST: gi|21256073|gb|BQ452961.1|BQ452961
genomic: TTCGGAAGTTACAAGTTACTTGAGTGGAATGCTGAGCCTCCACTGAAACGgtaaattttt ... aatgatgcagGACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTAC
EST: TTCGGAAGTTACAAGTTACTTGAGTGGAATGCTGAGCCTCCACTGAAACG GACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTAC
genomic: TTCGGAAGTTACAAGTTACTTGAGTGGAATGCTGAGCCTCCACTGAAACGgtaaattttt ... aatgatgcagGACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTAC
aaatcgttgtatgaattattgcatgtgcatcacatttctttctgaaatgatgcagGACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTACATTGGTTCTAGGAATATCAGCCTTAGGAATATTCTTAATTTGGAAAAAA
ttgtatgaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaataatgatttggtggagagaaagacacaaaaaaagatgtataaatcgttgtatgaattattgcatgtgcatcacatttctttctgaaatgatgcagGACTTGGTGGCAGCAATATTATTTGGTTGTGGCTTTAGCTGTTTCGCTTACATTGGTTCTAGGAATATCAGCCTTAGGAATATTCTTAATTTGGAAAAAA
- - - - - - -tggtgga
- - - - - - - - - - - gaaagac
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt