1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtacatcctgcttttatgcctttactataataggtctaagcaacatgaataccttttgatattgatgaccattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAA
species | Glycine max |
transcript | GLYMA11G03230.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAEST: gi|254335298|gb|GR846795.1|GR846795
genomic: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
EST: GATCAATGATCCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAEST: gi|20497874|gb|BQ272804.1|BQ272804
genomic: GATC-ATGAT-CCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
EST: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAAAACAAA
genomic: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
tactataataggtctaagcaacatgaataccttttgatattgatgaccattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAA
tattgat putative branch site (score: 3)
ccattcc putative PPT
ttttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcctgcttttatgcctttactataataggtctaagcaacatgaataccttttgatattgatgaccattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAAGCTGCACAAATACAACATGGTTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC