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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacgcactagctagttcaaatcttcaaatttaccaattacaatttttctcaatatctcttgaagtcaagaatgagcagaaatagagtaacatgcacctatgtttatatacaatgcattatgttggagatccaaaagcttgcttaagattctcattgtcatcaacctgaactgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCC

Basic information

species Glycine max
transcript GLYMA11G02690.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02690.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
gtgcacgcactagctagttcaaatcttcaaatttaccaattacaatttttctcaatatctcttgaagtcaagaatgagcagaaatagagtaacatgcacctatgtttatatacaatgcattatgttgga--gatccaaaagcttgcttaagattctcattgtcatcaacctgaactgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCC
                                                                             | | || || ||| | |    | | | | | |    ||| || |  | |      | |   | | |  | |    ||||  ||     |   ||    ||||| |||||||||| ||| | ||||||||||| |||| |||||||||||||||||   |    ||| | ||||| |||    | ||| | || |||||     
-----------------------------------------------------------------------------gta-aagtaaagtgagacctgcttgt-tatctgagtaatacaattagctaagctaagctttatgttcacattct-ttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA

upper sequence: GLYMA11G02690.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 3'ss of exon 11
gtgcacgcactagctagttcaaatcttcaaatttaccaattacaatttttctcaatatctcttgaagtcaagaatgagcagaaatagagtaacatgcacctatgtttatatacaatgcattatgttggagatccaaaagcttgcttaagattctcattgtcatcaacctgaactgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCC
                                                         |  || |   |  |      |  |||||    | | |     |||    |  | ||||      || |  ||  |   |         | |  ||||| |||     ||  || ||||||| | ||||| ||||||||||||||| |||| |||  ||||||||||||||| || || |||||||||||||||||||   ||||| ||||||||||||| |
---------------------------------------------------------ttcctggtttttgaattctcgttgaaatgagatgatacaactctacagcttaaaacaa------atttctgaattttga---------tgatgttctc-ttg-----aatttgtactgcagCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggagatccaaaagcttgcttaagattctcattgtcatcaacctgaactgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCC
                     ttaagatt  TA-rich tract