1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agaacattcctgtgccaccatatcagtctcctgtgttgggcttcctatgtcttgcgaaaatgaactgtttgaacgtgtgatatttttttatttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACGGATGTCCCGAGTGAGAGAGAAATTAACCGCCTTGCGGC
species | Glycine max |
transcript | GLYMA11G00640.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAG CACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCTEST: gi|193374840|gb|FK341304.1|FK341304
genomic: CATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAGgtttgttctt ... tttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCT
EST: GCTCTTTAACACAACTTCTACAG CACAAGACAGAAGAGAAATGTTGCGGGAGATTATGCGTAGAGGTACTAGCTEST: gi|193447248|gb|FK412757.1|FK412757
genomic: GCTCTTTAACACAACTTCTACAGgtttgttctt ... tttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCT
EST: CATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAG CACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCT
genomic: CATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAGgtttgttctt ... tttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCT
tatgtcttgcgaaaatgaactgtttgaacgtgtgatatttttttatttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACGGATGTCCCGAGTGAGAGAGAAATTAACCGCCTTGCGGC
tttttttatttatt CT-rich tract
tgtgatatttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacattcctgtgccaccatatcagtctcctgtgttgggcttcctatgtcttgcgaaaatgaactgtttgaacgtgtgatatttttttatttattgcagCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACGGATGTCCCGAGTGAGAGAGAAATTAACCGCCTTGCGGC
- - cattcct
- - - - - - tgccacc
- - - - - - - - - - - - - tctcctg
- - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - ctatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtgtg