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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtagaatgaagacatgatctaaagtccttgttataccagtatttttaaatttgcaatatttgaaggatttcctcccatttttttctttgttggatgcagTATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTTTTTGACTATGTTCTGCATCAAGTTAATGAAAATTGCATAGCTACTGGAA

Basic information

species Glycine max
transcript GLYMA10G43560.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43560.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 11
--tgtagaatgaagacatgatctaaagtccttgttataccagtattt--ttaaatttgcaatatttgaaggatttcctcccatttttttctttgttggatgcagTATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTTTTTGACTATGTTCTGCATCAAGTTAATGAAAATTGCATAGCTACTGGAA
  |||    | |  |   ||     | |  ||  ||||| |  | ||  |||||| |      |||||    |        | || ||  ||  ||  ||||||||  | ||||  ||||| || || ||||| | |||||| |||  ||||||||||||||||||| |||||||| |||||||||  |||||||||||  |  
gttgttatgtcataagcagaagcggatttatttctatactaaaacttatttaaatctat----tttgacctttacatgataacttcttagttctttcaatgcagTACTCGCTTGCCAACTCAAGGGAAGAGAGAAGAAATCTATATCTGGTGCTTTTTGACTATGTTTTGCATCAAATTAATGAAACATGCATAGCTACCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685532|gb|AW756180.1|AW756180
EST:     TTCAATTTCTTTTACGTGAG                         TATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTT
genomic: TTCAATTTCTTTTACGTGAGgtatgcttat ... ttggatgcagTATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTT
EST: gi|193581387|gb|FK537894.1|FK537894
EST:     TCGTGAATCAACTTGATCTGATTGGAGGAGTTCAATTTCTTTTACGTGAG                         TATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTT
genomic: TCGTGAATCAACTTGATCTGATTGGAGGAGTTCAATTTCTTTTACGTGAGgtatgcttat ... ttggatgcagTATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatttgcaatatttgaaggatttcctcccatttttttctttgttggatgcagTATGCCCTTGTAAACTCGAGAGAGGAGAGGAAAAATCTGTATTCGGTGCTTTTTGACTATGTTCTGCATCAAGTTAATGAAAATTGCATAGCTACTGGAA
                       tttcctcccatttttt  CT-rich tract
                                atttttttctttgtt  TA-rich tract