Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcaccatttagattgttggagatttttgttgattgattaactatgtggatttaatattgaggccaaacctaaacattctaattctttttaactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG

Basic information

species Glycine max
transcript GLYMA10G42940.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 11
gtcaccatttagattgttggagatttttgttgat--tgattaactatgtggatttaatattgaggccaaacctaaacattctaattcttttt-aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
   |  |  | | || ||| | || |    | ||     ||    || ||||    ||      |   |  |||| || | |  |  | ||| || ||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||
--aaaaaacttggttcttgaaaatatacaattatatccttttgtcatatggagcctatgg-attgttgaggctaagcaatgttttcttgtttgaattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452473|gb|BM953883.1|BM953883
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
EST: gi|15813509|gb|BI785784.1|BI785784
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
EST: gi|16283344|gb|BI945501.1|BI945501
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
EST: gi|16283207|gb|BI945427.1|BI945427
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
EST: gi|16279679|gb|BI943560.1|BI943560
EST:     ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
EST: gi|16278507|gb|BI942940.1|BI942940
EST:     ATATCACTGAAGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG                         ATATACCCACCAATCAATGTTCTGCCGTCACTATCTCGGTGGATGAAG
genomic: ATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGgtgggttatg ... aactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggatttaatattgaggccaaacctaaacattctaattctttttaactgagcagATATACCCACCAATCAATGTCCTCCCGTCACTATCTCGGTTGATGAAG
                                         ttttaac  putative branch site (score: 2)
                                     ttcttttta  CT-rich tract
                         taaacattctaattct  TA-rich tract