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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaatacatattcatcaattaagtggttttactgaaccctatgacgtcaactaatcatgtagccaaccacacctcgtgggataaggcttagtggttgttgttcttgtattatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG

Basic information

species Glycine max
transcript GLYMA10G41940.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtaagagaatacatattcatcaattaagtggttttactgaaccctatgacgtcaactaatcatgtagccaaccacacctcgtgggataaggcttagtggttgttgttcttgtattatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG
                                                                              | || || | |  ||   |||  |  |||  | |||  |||||  | | || |  || |   || || ||     ||| |  |   ||  |||||   |||| ||||| |||||||||||||||||||| || ||  |||| |||||||  || || || |||||||||
-----------------------------------------------------------------------------gttgtcgg-tgaaactcc-tggcagacgttactttatc-tgaaatttgagttgtggcattgtaataagaatttcctcttat-gtatattcttattt---tgttccagGTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcagGTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTG
                               ttcttttctatttatt  CT-rich tract
                              attcttttctatttat  TA-rich tract