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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcagAAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 11
---gtacatttttctgcatctct-ctcgtttccctcccacccctacccaaaagaagtcacattggag-atatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcagAAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG
    ||  | |   ||| | | | |   | |    |      |||   |    ||    |||| | |   ||       |||||||    ||   |  |  || ||    |||  || || |||||| |||||||||||||| || || | ||||||||| || ||||| ||||||||| | ||||| || |||||||| ||||||||||| |
gtactatctctccttgcttatttgcaaatattatacttgatactaagaatgccaaccagcattagtgtgcatatagttcaaatttt--tcttacattttggtaaatgttgtgtcgttctt-cagAAAACCAGTGAAAAAGGTGGGAGCGTTTTGTTGGCTTTCCCTTGCTATTTGCATTATTGAACTACTCATTTGCATCAAGTTTGGACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237104|gb|BE805992.1|BE805992
EST:     CTCATACCTTCAAGACAG                         AAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTG
genomic: CTCATACCTTCAAGACAGgtacattttt ... attttttcagAAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTG
EST: gi|208103894|gb|GD906839.1|GD906839
EST:     CTACTTGCGATCCCAACAATTCGCGAGTACAACTAATACCTTCAAGACAG                         AAAGCCAGTGAAAAAG
genomic: CTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacattttt ... attttttcagAAAGCCAGTGAAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcagAAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTGCATTGTGGAACTTCTGATTTGCATTAAGTTTGGACACG
             ttttgac  putative branch site (score: 3)
                                              ttttttc  putative PPT
         aaaattttgacatttt  TA-rich tract