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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctttatgattgtatacaatgttcattgccatttttttggctgtgacagtttattctaatttcttcaacttaatttcttttaattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG

Basic information

species Glycine max
transcript GLYMA10G39540.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 11
gtgagttctttatgattgtatacaatgttcat-tgccatttttttg-gctgtgacagtttattctaatttcttcaacttaatttcttttaattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG
                 ||      | || || ||| ||| || ||   | ||     |  ||||   || |   | |||  |  | ||   ||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||||||| | |||||||  ||||||| |||||||||||||| 
-----------------gtgagtcctattaatatgcaattgttgtgcattatgttctgtctttctgtcttatctgaattacctgttatt--ctttcagTTACATATCATATCTTCCTTTGGCACACATCTATGAACGGGCCAACCAGGTCATGACAGCATATTTTGGAGTTGCAGTTGGATTCTACCAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193364572|gb|FK330057.1|FK330057
EST:     GCAAGTGTTGCTGGGAGTGCTAGGGATCAGAAATTCGGCCCTTCTGATGT                         TTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT
genomic: GCAAGTGTTGCTGGGAGTACTAGGGATCAGAAATTCGGCCCTTCTGATGTgtgagttctt ... taattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggctgtgacagtttattctaatttcttcaacttaatttcttttaattttcagTTATATATCCTATCTCCCTTTGGCACACATTTATGAGCGAGCAAACCAGGTCATGACAGTACATTTTGGCATTGCAGTGGGATTCTACCAGGGG
                                      tttcttttaattttc  CT-rich tract
              tttattctaatttctt  TA-rich tract