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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaatgttctcccacgttttctccatttattttttcttgcaaaatttcttttaaatatattaaaccctcatttgttatttttctaacctggaaaattgtcttatcatgtaatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTAGTCCTTGAGACTGGGAAACCAATCTATACCCAATC

Basic information

species Glycine max
transcript GLYMA10G38680.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193672792|gb|FK615494.1|FK615494
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTT                         GGTTATACCGATGTAAAG
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAG
EST: gi|7478693|gb|AW666367.1|AW666367
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTT                         GGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTAT
EST: gi|151412885|gb|EV282697.1|EV282697
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAG-CTCTTGCCAAGGCTGTT                         GGTTATACCGATGTAA-GCAA-GATCACTTCTCACTTCCATGGAGA-CTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctcatttgttatttttctaacctggaaaattgtcttatcatgtaatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACATTAGTCCTTGAGACTGGGAAACCAATCTATACCCAATC
                 ttctaac  putative branch site (score: 1)
      atttgttatttttcta  TA-rich tract