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...agttacacaatgtgattgtgtggatccaaatatctcttttatgtccctatttcaagtgaaaaggttaattactgtctattttggatttaatgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTACAGCAGTTGTACTTCAG
species | Glycine max |
transcript | GLYMA10G36600.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|9903260|gb|BE612228.1|BE612228
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|112361173|gb|EE400151.1|EE400151
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|19348200|gb|BM892732.1|BM892732
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|151406577|gb|EV276392.1|EV276392
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|11687896|gb|BF595572.1|BF595572
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|22524291|gb|BU083102.1|BU083102
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: CTGCCCAATAGGGCTGGAGACAG GTTGTTGATGCATTATGCAATGTTGTGTCAGCCTCACCAACAAAAGCAGCTEST: gi|15200260|gb|BI424257.1|BI424257
genomic: CTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTEST: gi|33390206|gb|CA853413.1|CA853413
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAEST: gi|9902661|gb|BE611550.1|BE611550
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCA
EST: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAG GTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
genomic: AAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGgtacaagcac ... tgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCT
cctatttcaagtgaaaaggttaattactgtctattttggatttaatgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTACAGCAGTTGTACTTCAG
atttaat putative branch site (score: 4)
tattttggatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttacacaatgtgattgtgtggatccaaatatctcttttatgtccctatttcaagtgaaaaggttaattactgtctattttggatttaatgttatgtagGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTACAGCAGTTGTACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - -caatgtg
- - - - - - - - tgtgtgg
- - - - - - - - - - - -atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtc