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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagctgatcaggtggttttttgcatatttaattacacatgacgattactttgctttactgtatgtatttgatatgaacatggtattacacttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCAAGAG

Basic information

species Glycine max
transcript GLYMA10G35560.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35560.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 3'ss of exon 11
ttaagctgatcaggtggttttttgcatatttaattacacatgacgattactttgctttactgtatgtatttgatatgaacatggtattaca---cttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCAAGAG
||  | |   |   |  | |||||| ||| ||  |   | || | ||   |||   ||  |   | |||  ||     | ||| || | ||    |  |||||||||| ||  | ||||| ||| |||||||| |||| |||||| | ||||| ||||| ||||||||||| |||||||| ||| |||
ttgggttttac---ttttattttgcgtatatagattgtcctggctatgtttttttcttcttaattatataggaatcatatatgttactgcaatgttcatgcagAAGAAACAGCACACTGTTACTAGAGATAAACAAGAGACAGAGCTAATAGCTCGTGGCCGCCATGATCCATGTGTTGTTCCACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276418|gb|BI941848.1|BI941848
EST:     GGGAAATCATTAATATGAGAATAGCTNTCAAGCCAACATCAACAATTGGA                         AAGAAGCANAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16276792|gb|BI942046.1|BI942046
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATTAGC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTAT-AGC
EST: gi|193486868|gb|FK450449.1|FK450449
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTT
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTT
EST: gi|120532705|gb|EH260838.1|EH260838
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|9565502|gb|BE475011.1|BE475011
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|10843361|gb|BF066663.1|BF066663
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254333630|gb|GR848548.1|GR848548
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATNNNNNNNGAAACAGAGTTTATAGC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGAT-AAAAAAGAAACAGAGTTTATAGC
EST: gi|33387796|gb|CA851003.1|CA851003
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|208247306|gb|GE048950.1|GE048950
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254335192|gb|GR846689.1|GR846689
EST:     CAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: CAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16277466|gb|BI942396.1|BI942396
EST:     GGGAAATCATTAATATGAGAATATCTTTCAAGCCAACATCAACAATCGGA                         AAGAAGCAATATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254325998|gb|GR838879.1|GR838879
EST:     CAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: CAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|19053065|gb|BM731732.1|BM731732
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|19268860|gb|BM885116.1|BM885116
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16282970|gb|BI945300.1|BI945300
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCACAATACTGTGACTCGAGATACAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|193667765|gb|FK610185.1|FK610185
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGC-AAATACTGTGACTCGAGAT-AAAAAGAAACAGAG-TTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|207808737|gb|GD776748.1|GD776748
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|7691321|gb|AW759514.1|AW759514
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactttgctttactgtatgtatttgatatgaacatggtattacacttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCAAGAG
                      atttgat  putative branch site (score: 5)
                 tatgtatttgatat  TA-rich tract