1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tataataataaattaacaatatcttccttggaataatctttaacacattttatatgatcttctttctcagaatcttatgctttaattaacttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTATCTCCTATTGCTATGAGTCCATTGACTT
species | Glycine max |
transcript | GLYMA10G34820.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG GGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTAEST: gi|51344538|gb|CO985271.1|CO985271
genomic: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAGgtttgctctc ... ttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTA
EST: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG GGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTAEST: gi|151406306|gb|EV276121.1|EV276121
genomic: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAGgtttgctctc ... ttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTA
EST: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG GGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTAEST: gi|18726842|gb|BM523788.1|BM523788
genomic: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAGgtttgctctc ... ttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTA
EST: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAG GGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTA
genomic: ACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAGgtttgctctc ... ttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTA
cattttatatgatcttctttctcagaatcttatgctttaattaacttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTATCTCCTATTGCTATGAGTCCATTGACTT
aattaac putative branch site (score: 2)
cttcact CT-rich tract
ttatgctttaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataataataaattaacaatatcttccttggaataatctttaacacattttatatgatcttctttctcagaatcttatgctttaattaacttcactgcagGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTATCTCCTATTGCTATGAGTCCATTGACTT
- - - - - - - - - - - - -ccttgga
- - - - - - - - - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc