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...taatctgaattgcatagtttgacttcttatcttttgaacatacatgccttgttgatatgagttcatgctaaatcttaactttatcttgatctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT
species | Glycine max |
transcript | GLYMA10G34370.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG AGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGEST: gi|192333297|gb|FK024274.1|FK024274
genomic: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGgtgataattg ... ctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGG
EST: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG AGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGEST: gi|31311023|gb|CD396226.1|CD396226
genomic: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGgtgataattg ... ctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGG
EST: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG AGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGEST: gi|9564018|gb|BE473527.1|BE473527
genomic: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGgtgataattg ... ctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGG
EST: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG AGAATACCCCTAAATTTTGATGACAAAGAEST: gi|58018836|gb|CX705578.1|CX705578
genomic: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGgtgataattg ... ctcttttcagAGAATACCCCTAAATTTTGATGACAAAGA
EST: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG AGAATACCCCTAAATTTTGATGACAATGAGGGTTTGTGGTTTCTCAAGAGG
genomic: AAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGgtgataattg ... ctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGG
gccttgttgatatgagttcatgctaaatcttaactttatcttgatctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT
tcttgatctcttttc CT-rich tract
taaatcttaactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctgaattgcatagtttgacttcttatcttttgaacatacatgccttgttgatatgagttcatgctaaatcttaactttatcttgatctcttttcagAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - -ttgcata
- - - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct