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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtttactgtgttcttcattctttttaatttctataactgctattgtcctatgtgtgacgaaagttttatccattagGGTGATGGCGATTATGAACTTGTCAAGGATGTCATATTTGATGACTACCTCCAGCAGCGAATAGCTAAGGTATGAAACTTCATACATTTTATGCCACAAC

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34150.3 (Glycine max), 3'ss of exon 11
lower sequence: AT5G58330.3 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtttgtttactgtgttcttcattctttttaatttctataactgctattgtcctatgtgtgacgaaagttttatccat-tagGGTGATGGCGATTATGAACTTGTCAAGGATGTCATATTTGATGACTACCTCCAGCAGCGAATAGCTAAGGTATGAAACTTCATACATTTTATGCCACAAC
               || |  |  || ||| |  | ||  |    | || | |   || || | |  |  || |  | | |  |||| ||||| |||||||||||||||||||||||   | ||||||||||||| |  || ||||| || |||                               
---------------gtatgttctatccttat--acttaaaacctttctctagaggtaagtctcaaaattgtgtgttgcttacagGGAGATGGAGATTATGAACTTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG-------------------------------

upper sequence: GLYMA10G34150.3 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 11
gtaagtttgtttactgtgttcttcat--tctttttaatttctataactgctattgtcctatgtgtgacgaaagttttatccattagGGTGATGGCGATTATGAACTTGTCAAGGATGTCATATTTGATGACTACCTCCAGCAGCGAATAGCTAAGGTATGAAACTTCATACATTTTATGCCACAAC
|||||| | |   | | | | |||||  |||  | || |||   |  ||  ||  ||     |   ||  || |  | | | | |||| ||||| || |||||||||||||||||||| ||||||||||| |||||||   |||||||| | |||                               
gtaagtctatggtcagagattttcatgttctgctcaaattc---atttgaaatcatctc---taaaacataaatactgttcttcagGGAGATGGTGACTATGAACTTGTCAAGGATGTAATATTTGATGAATACCTCCTCAAGCGAATAACCAAG-------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatttctataactgctattgtcctatgtgtgacgaaagttttatccattagGGTGATGGCGATTATGAACTTGTCAAGGATGTCATATTTGATGACTACCTCCAGCAGCGAATAGCTAAGGTATGAAACTTCATACATTTTATGCCACAAC
         ctataac  putative branch site (score: 3)
                                          ttttatcc  putative PPT
     atttctataa  TA-rich tract