1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gctaaccagaaaggttaactgtcgtatagtgtagccaccaggatttatcatcttaaagttattcactttgtttcttaattgacatgtttttttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG
species | Glycine max |
transcript | GLYMA10G33820.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAG GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAGEST: gi|6567074|gb|AW234701.1|AW234701
genomic: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAGgtatgttgca ... tttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG
EST: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAG GATCATTTCTCACTGTCTCGAAAGATGGCAGTGAATATGAAATATATAEST: gi|14991854|gb|BI317527.1|BI317527
genomic: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAGgtatgttgca ... tttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATA
EST: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAG GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAGEST: gi|208311803|gb|GE106925.1|GE106925
genomic: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAGgtatgttgca ... tttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG
EST: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAG GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAEST: gi|193546220|gb|FK503181.1|FK503181
genomic: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAGgtatgttgca ... tttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATA
EST: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAG GATCATTTCTCAATGTCTCGAAAGATG
genomic: GGAACAAGCTACTTCTTGATATTGGTCCATGGTTATCTGATAAGATCAAGgtatgttgca ... tttattgcagGATCATTTCTCAATGTCTCGAAAGATG
tatcatcttaaagttattcactttgtttcttaattgacatgtttttttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG
aattgac putative branch site (score: 3)
tttttttatt putative PPT
ttaattgacatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaaccagaaaggttaactgtcgtatagtgtagccaccaggatttatcatcttaaagttattcactttgtttcttaattgacatgtttttttattgcagGATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-ctaacca
- - - - - - - - - - - - - - - - - ccaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg