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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatagagctgaatgatatgtaaaaatgtttttttttttcttcctaacaacacctttataaagaaaggaatttatcaatattattgttattgtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATGGTGTAAAGGTATTGGCGCTCACCCTAGCCAAATTGTCCAGTCAGTAACA

Basic information

species Glycine max
transcript GLYMA10G32850.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590824|gb|AW706568.1|AW706568
EST:     GGCCAGGTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GGCCAGGTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|193398343|gb|FK363481.1|FK363481
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAAAT
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAA-T
EST: gi|13790927|gb|BG653518.1|BG653518
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|213591946|gb|DB977346.1|DB977346
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|21675359|gb|BQ627710.1|BQ627710
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|193692910|gb|FK628491.1|FK628491
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAG
EST: gi|17963753|gb|BM270498.1|BM270498
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAAT
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCC-TGAAGAGTTTGCCACCATTGAAGATATGTCAAAT
EST: gi|6133980|gb|AW132430.1|AW132430
EST:     GTTGTCTCCAATGGGCATGATTNTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|22931346|gb|BU548485.1|BU548485
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|23729550|gb|BU762868.1|BU762868
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|209728924|gb|BW654991.1|BW654991
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|13252792|gb|BG363695.1|BG363695
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|10255068|gb|BE822834.1|BE822834
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|19345779|gb|BM890659.1|BM890659
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|298164165|gb|HO013810.1|HO013810
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|192306704|gb|FG998858.1|FG998858
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacacctttataaagaaaggaatttatcaatattattgttattgtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATGGTGTAAAGGTATTGGCGCTCACCCTAGCCAAATTGTCCAGTCAGTAACA
 tcctaac  putative branch site (score: 1)
                                           ttgttttt  putative PPT
        tttataaagaaaggaa  TA-rich tract