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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttacttatgagcagctttgtgtgtaactaaaaataaaaatcaaaagcagagaaactttatttgaaattttattaattaatggatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTC

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 11
gtttgttacttatgagcagctttgtgtgtaactaaaaataaaaatcaaaagcagag-aaactttatttgaaattttattaattaatggatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTC
|| |  |  |||||   | ||||  |  | |  | ||   ||  | ||      |  ||| || | |||||  ||  ||  | ||| |||  ||||| |||  ||| | ||   |||| | || |||||||| |||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||
gtataatctttatggataccttttggactgaaaataacacaaggttaagcatgcactaaatttgagttgaatgttcttttttcaattgatgcagGTTACAAACTCCCAAACCGCTGAGCTTTTAAAGTCAATTTCAGGATTGAAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481623|gb|AW200894.1|AW200894
EST:     TAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG                         GTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAA
genomic: TAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAGgtttgttact ... atggatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaatcaaaagcagagaaactttatttgaaattttattaattaatggatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTC
                agaaactttatttgaa  TA-rich tract