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gtatttttaaatcacttctcatttattttcaacttgcattttgaatgtctcttgaattttctccctgattcattattgcaatgttactcaaattacgtgcagaatgcatatttaaactttccaattgtatcataatttatattctgcacttgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTGTTTGGATTGCTGGAAAGGAATATACCTTGGCACGAGTGCATTTCTTGT
species | Glycine max |
transcript | GLYMA10G31960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTEST: gi|208028852|gb|GD828766.1|GD828766
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAEST: gi|208069252|gb|GD869160.1|GD869160
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACA
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGGTGTGCAATGGTCGCAAACAGGTEST: gi|7235227|gb|AW570556.1|AW570556
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTEST: gi|254344049|gb|GR850959.1|GR850959
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTEST: gi|17963267|gb|BM270018.1|BM270018
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
gcatatttaaactttccaattgtatcataatttatattctgcacttgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTGTTTGGATTGCTGGAAAGGAATATACCTTGGCACGAGTGCATTTCTTGT
aattgtatcataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttaaatcacttctcatttattttcaacttgcattttgaatgtctcttgaattttctccctgattcattattgcaatgttactcaaattacgtgcagaatgcatatttaaactttccaattgtatcataatttatattctgcacttgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGTGTTTGGATTGCTGGAAAGGAATATACCTTGGCACGAGTGCATTTCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA