1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cactgttgtttttaggattaactttgtagttcaattgcttgtgggtactgcagtatctgatttatcttatctcttcagcattattatttattatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCACGATATCA GCATAGTGTATAGGTAGGTTT-GGATGCTCCATATGTTATGAGTEST: gi|193488290|gb|FK456113.1|FK456113
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGG-AGGTTTTGGATGCTCCAAATGTCATGAGT
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAGEST: gi|14011604|gb|BG726526.1|BG726526
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAEST: gi|23731912|gb|BU764103.1|BU764103
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAEST: gi|10231661|gb|BE800549.1|BE800549
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAEST: gi|7690977|gb|AW759112.1|AW759112
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
EST: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAEST: gi|31471412|gb|CD413440.1|CD413440
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
EST: ATTGGAAACCAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAA GCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
genomic: ATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAGGATATAAgtatggttgc ... ttatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAA
tactgcagtatctgatttatcttatctcttcagcattattatttattatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG
atctgat putative branch site (score: 4)
attattatttattatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgttgtttttaggattaactttgtagttcaattgcttgtgggtactgcagtatctgatttatcttatctcttcagcattattatttattatctgtagGCATAGTTTAAAGGAGGTTTTGGATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG
-actgttg
- - - - - - - - - - - - - - - -caattgc
- - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - gtatctg