1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctcttttctgcctttaggtggatatgctatcgtgcctaagtagatttggtgtatctagctgcttttgtaaataataatgatgattgactttttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA
species | Glycine max |
transcript | GLYMA10G29360.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAG GATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGEST: gi|58022646|gb|CX709387.1|CX709387
genomic: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGgtaatgtatt ... tttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAG
EST: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAG GATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGEST: gi|16343693|gb|BI969288.1|BI969288
genomic: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGgtaatgtatt ... tttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAG
EST: TTCCCCTCCTCACCAAGAATGCAGTTGAATCNNNACGGTACAGGGCTGAG GATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGEST: gi|58019626|gb|CX706368.1|CX706368
genomic: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGgtaatgtatt ... tttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAG
EST: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAG GATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAG
genomic: TTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGgtaatgtatt ... tttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAG
ttggtgtatctagctgcttttgtaaataataatgatgattgactttttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA
gattgac putative branch site (score: 3)
ctttttcttgc CT-rich tract
ttttgtaaataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttttctgcctttaggtggatatgctatcgtgcctaagtagatttggtgtatctagctgcttttgtaaataataatgatgattgactttttcttgcagGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA
- - - -ctgcctt
- - - - - - - - - - - - tgctatc
- - - - - - - - - - - - - - - -gtgccta
- - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat