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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcaacttgttactctaatattctttatttagctattcatgcttttaattcacctgtcttgaacaatttcattgtgcagCTTGGATTGATTCTTGGGCTGGTGCTCTCAGTCCTTCTTTTAAGTCTACTACCATTTGCTTCTAGGTTATTTACTAATGACATTAATGTTCTGCAACTTA

Basic information

species Glycine max
transcript GLYMA10G21860.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180707|gb|HO022146.1|HO022146
EST:     CAAGAGATGATTACAAAAAGGTTATTGCATCTGCCTCACGTGTGCTGCAG                         CTTGGATTGATTCTTGGGCTGGTGCTCTCAGTCCTTCTTTTAAGTCTACTA
genomic: CAAGAGATGATTACAAAAAGGTTATTGCATCTGCCTCACGTGTGCTGCAGgtatttcaac ... cattgtgcagCTTGGATTGATTCTTGGGCTGGTGCTCTCAGTCCTTCTTTTAAGTCTACTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttagctattcatgcttttaattcacctgtcttgaacaatttcattgtgcagCTTGGATTGATTCTTGGGCTGGTGCTCTCAGTCCTTCTTTTAAGTCTACTACCATTTGCTTCTAGGTTATTTACTAATGACATTAATGTTCTGCAACTTA
                  ttttaat  putative branch site (score: 3)
                                          tttcatt  putative PPT
                  ttttaattca  TA-rich tract