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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaaccagcctcaattgatatataacagttttctgcataagtattaataaagtacctaaaatactacattgttttgaagtccaaaaaaaaaagtacctatataatactacattttgcattgaagtgtctaattgtaacatttttttgtctttcagGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCATGGGATTCTTAGGCTTCTGTTCCAGTCAGTGATATATTTTATTCTAGAG

Basic information

species Glycine max
transcript GLYMA10G07420.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938366|gb|BQ081687.1|BQ081687
EST:     CATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGG                         GTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA
genomic: CATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGgtaaggaaac ... tgtctttcagGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA
EST: gi|208231333|gb|GE035286.1|GE035286
EST:     TCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGG                         GTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA
genomic: TCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGgtaaggaaac ... tgtctttcagGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA
EST: gi|9204536|gb|BE330760.1|BE330760
EST:     CATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGG                         GTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA
genomic: CATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGgtaaggaaac ... tgtctttcagGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatactacattttgcattgaagtgtctaattgtaacatttttttgtctttcagGTGTGGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCATGGGATTCTTAGGCTTCTGTTCCAGTCAGTGATATATTTTATTCTAGAG
                               ttgtaac  putative branch site (score: 2)
                                     catttttttgtctttc  CT-rich tract
                            taattgtaacattttt  TA-rich tract