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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 3'ss of exon 11
gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
                                            ||    | |    |||  ||| |  ||||  |   ||     |   | | ||      |||  | |||  ||  |  | ||      ||||| || ||||||||||||||||||||||| ||||| ||||| ||||| |||
-----------------------------------------gtaagactgtattgcatttgattgtttcagtttctcaattagcactg--tgctatcaagcattggttttaactacttccatctta-----cagGGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAG

upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 11
gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
                                  ||  || ||  ||| || | |  |    | | | | ||   ||| |  |     |  |  ||||  |     ||       ||||| | | || ||||||||||| ||||| || ||||||||||||||| |||||||||| ||||| |||
---------------------------------gtaagcagact-gttattatatcatgatatggtttttgtatgttgatcaacggaagacagcattgtga---agcttctgtttcaact-tgtact-tttcagGGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG

upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtat-tctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
                                                || |   |     ||| || |  |    |||  | ||| | || || |   | |||   |  ||    |  | ||| ||| | |||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| |||
------------------------------------------------gtatgaatgcaatcttcctttgctcttctgtcct-tttctttttcact---agttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG

upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 12
gtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
|||| ||||| ||         || ||  ||| | |||  ||  || || |    |||| ||||||  |       || |  ||||  | | || ||   |||   |  | |||       | |||| |||||||| |||||||||||||| |||||||||||| | |||||||| ||||| |||
gtaaaatcctgatctctttcccatatatttttatgacagtaaaaagatgat---attttcacttgcact-------tgctacatttaggattcattt---attcatcctttagct------ttttctatttcagGGAAAGGTTAACCCTACTCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
                     atttgac  putative branch site (score: 4)
                                            ttctgtttc  putative PPT
     ttttgtta  TA-rich tract