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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttctctcaattcatcaacttttgttgctattgttttacctatttatttataaaaggtttatggtgtgataacttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatttttctctcaattcatcaacttttgttgctattgttttaccta------tttatttataaaaggtttatggtgtgataacttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
||| |  |||| | ||||  | |  | |   | |  |||  ||||  |       |  ||| ||  | || ||||   | | | | |||     |  || || |    |||| || |||||||||||||| |||||||| || |||||  | |||||||||||    || ||| | |||||||| || |||||||||||||| |||||||
gta-tacttctttaaattt-taatttctctctccctttggcttacacagagtttctcctttttatcatgtatatgtctttaca-cgtgaagtgaacattcttct----agGCCTTGTCTGTTGGAATATTCCCATATGTGCTGAAGCTTCTGCAAACAACAACGAATGAGCTAAGACAGATCCTGGTTTTCATATGGACAAAAATTCTTG

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatttttctctcaattcatcaacttttgttgctattgtt-ttacctatttatttataaaaggtttatggtgtgata-----acttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
    |   |||      |      | | | || |  ||||| |||   ||||  |     | | | | | |||||||      |||||||    || |||||||    |||| |||||||||||||||| ||| |  ||  | |||||| | |||||||||||    || ||||| ||||| ||||| ||||||||||||||||| || |
---gtacctctaatgccttgaagtcctgtttttcccttgttcttagacatttcctctcccatgttatcttgtgtgatgtccttacttgatgtgaatatttttat----agGCCTTATCTGTTGGAATATATCCTTGCGTAGTGAAGCTGCTGCAAACAACAACTATTGAGCTACGGCAGATTCTTGTTTTCATATGGACAAAGATCCTAG

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
gtaatttttctctcaattcatcaacttttgttgctattgttttacctatttatttataaaaggtttatggtgtgataacttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
               | | ||   | |   || |  ||  |||   | | | || | || | ||   |  | |||| |   | ||      || ||   || ||||  | || ||||||||||||||||||||||| |||||||| ||||||||||| || ||| || | || || |||||||| |||||||||||||| ||||
-------------gtagttattggcatcatttccatttcatttctttttctgttcacaatatgtgatttatttgattatggggta------ttgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S124_156V6.1 (Physcomitrella patens), 3'ss of exon 11
gtaatttttctctcaattcatcaacttttgttgctattgttttacc-tattta-tttataaaaggtttatggtg-tgataacttgatacc-tatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
        | | ||  | ||||     || ||      || ||||  | || | ||| |||  |   |    |  |  |||  || ||   |    || | |    |||| || ||||| ||||||||||| || ||||| |||||| ||||||||||| |   |||  |||| ||||| || ||||| || ||||| |||||| | |
--------tttgtcgttgcatcgctcatttttagggcagtcttacgatgttgagtttgtaagggagctgaaatcctagtaatgtggtattgtgaacttgtttggtcagGCTTTGTCTGTGGGAATATTTCCCTACGTTCTTAAGCTGCTACAAACAACAGCTAACGATTTACGGCAGATTCTCGTATTTATCTGGACGAAGATTTTAG

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S199_73V6.1 (Physcomitrella patens), 3'ss of exon 11
gtaatttttctctcaattcatcaacttttgttgctattgttttacctatttatttataaaaggtttatgg--tgtgataacttgatacc-tatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
     |||    |    ||||   || |||  |  | | ||| |  | ||  ||   |   |  |||  |    |  ||| ||| |    | || || | |    |||| |||||||| |||||||||||||| ||||| |||||| | ||||||||| |  | ||  | || ||||| ||||| || || ||||| |||||| | |
----ctttatgattggatcatt--ctattggagggact-tttaagatgttggttccaatgggaattacagatcattctaatttggtgttgtgttcttgtttggtcagGCTTTATCTGTAGGAATATTTCCATACGTTCTTAAGCTGCTGCAAACAACAGCTACTGATTTGCGGCAGATTCTTGTGTTTATCTGGACGAAGATTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttataaaaggtttatggtgtgataacttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG
                                    cctattttttt  CT-rich tract
                              ttgatacctatttttt  TA-rich tract