1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaatttcattgcttaatacaacataaaaatattttgatgggcagtgaaataaagtttcatatttagttaaatattgtgtgcattatttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGAACTTGGTGATAGTCGTGAACGAGGGCGAGACCATGATCGTAGGAGCAGA
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAG ATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGAEST: gi|254336538|gb|GR842717.1|GR842717
genomic: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGgtaaatttca ... atttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGA
EST: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAG ATCAAAAGAACGGAGTAGGGATCGAGACAGG-AGTCTEST: gi|254336539|gb|GR842718.1|GR842718
genomic: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGgtaaatttca ... atttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCT
EST: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAG ATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGAEST: gi|208146329|gb|GD946208.1|GD946208
genomic: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGgtaaatttca ... atttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGA
EST: GAAGAAAGGAACGAGAGCCGAAAGACTGATCGGCTTGATGACAGGAG ATCAAAAGAACGGAGTAGGGAEST: gi|16343424|gb|BI969019.1|BI969019
genomic: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGgtaaatttca ... atttgcatagATCAAAAGAACGGAGTAGGGA
EST: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAG ATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGA
genomic: GAAGAAAGGAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGgtaaatttca ... atttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGA
ggcagtgaaataaagtttcatatttagttaaatattgtgtgcattatttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGAACTTGGTGATAGTCGTGAACGAGGGCGAGACCATGATCGTAGGAGCAGA
tgaaataaagtttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttcattgcttaatacaacataaaaatattttgatgggcagtgaaataaagtttcatatttagttaaatattgtgtgcattatttgcatagATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCTAGTAGGGACCGTGAACTTGGTGATAGTCGTGAACGAGGGCGAGACCATGATCGTAGGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG