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...tcttgatgtatttaagtaggtatcaaattaaagccactttgcaaattgcttacgaaatattagactgaaactaaacattcaattccttttttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
species | Glycine max |
transcript | GLYMA09G38110.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATATTACTGAGGGACAGATATATATTGNNAGGCAGTTGTATAANAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|27426282|gb|CA937802.1|CA937802
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|27426098|gb|CA937618.1|CA937618
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|16279376|gb|BI943404.1|BI943404
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|20812032|gb|BQ296510.1|BQ296510
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: TATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|16277795|gb|BI942566.1|BI942566
genomic: TATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|16283538|gb|BI945603.1|BI945603
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGATGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTGCATCATTGTCTCGTATGATGACGEST: gi|16277730|gb|BI942533.1|BI942533
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|9258589|gb|BE346736.1|BE346736
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGEST: gi|16284553|gb|BI946150.1|BI946150
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
ttgcttacgaaatattagactgaaactaaacattcaattccttttttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
aactaaa putative branch site (score: 2)
ttcaattcctttttt putative PPT
aattccttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgatgtatttaagtaggtatcaaattaaagccactttgcaaattgcttacgaaatattagactgaaactaaacattcaattccttttttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
-cttgatg
- - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - gccactt
- - - - - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acattca