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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgatgtatttaagtaggtatcaaattaaagccactttgcaaattgcttacgaaatattagactgaaactaaacattcaattccttttttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 11
-tcttgatgtatttaagtaggtatcaaattaaagccactttgcaaattg--cttacgaaatattagactgaaactaaacattcaattccttttttattgg--cagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
       |   ||   | |  |||  ||||| | ||  ||  || || |  | || | | | ||     ||  |||| || |   ||| | ||| | | |  |||||||| ||||||||||||||||| |||||| |||||||||| ||||||
aaaaaacttggttcttgaaaatatacaattatatccttttgtcatatggagcctatggattgtt-----gaggctaagcaatgttttcttgtttgaattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253833|gb|BE821599.1|BE821599
EST:     ATATTACTGAGGGACAGATATATATTGNNAGGCAGTTGTATAANAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|27426282|gb|CA937802.1|CA937802
EST:     ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG                         ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|27426098|gb|CA937618.1|CA937618
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16279376|gb|BI943404.1|BI943404
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|20812032|gb|BQ296510.1|BQ296510
EST:     TATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: TATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16277795|gb|BI942566.1|BI942566
EST:     ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG                         ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16283538|gb|BI945603.1|BI945603
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGATGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTGCATCATTGTCTCGTATGATGACG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16277730|gb|BI942533.1|BI942533
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|9258589|gb|BE346736.1|BE346736
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16284553|gb|BI946150.1|BI946150
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttacgaaatattagactgaaactaaacattcaattccttttttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
                       aactaaa  putative branch site (score: 2)
                                ttcaattcctttttt  putative PPT
                                   aattccttttttatt  TA-rich tract