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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcggagactaatctatgccagttataatttactagtattattataaaaagaaagtagttcagagtaaaatctcagctatatagtcatcatacttgtgattccaagatctgctattcaaagagtatctttatttagtttgtcaatcactgagcttctaaaagccttttgacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG

Basic information

species Glycine max
transcript GLYMA09G38010.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326691|gb|FK018878.1|FK018878
EST:     GCATTGCAAGGACAGTAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         -TGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCA-CACAGTGGCCG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCG
EST: gi|23063937|gb|BU578710.1|BU578710
EST:     GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGGCCG
EST: gi|58017972|gb|CX704714.1|CX704714
EST:     GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
EST: gi|58021325|gb|CX708066.1|CX708066
EST:     GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
EST: gi|193459520|gb|FK423853.1|FK423853
EST:     AGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
genomic: AGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
EST: gi|57575913|gb|CX548884.1|CX548884
EST:     GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
EST: gi|208318168|gb|GE110649.1|GE110649
EST:     GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAG                         GTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
genomic: GCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
EST: gi|151406834|gb|EV276649.1|EV276649
EST:     CATTGCAAGGACAGCAGTTGCCGTTGGGAGTGGATGGGATCTTCATGGAG                         -TGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTG
genomic: CATTGCAAGGACAGCAGTTGCCGTTGG-AGTGGATGGGATCTTCATGGAGgttcggagac ... gacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttatttagtttgtcaatcactgagcttctaaaagccttttgacttttcagGTGCATGATGATCCACTGAAAGCACCTGTTGATGGCCCAACACAGTGG
                                       ccttttgacttttc  CT-rich tract
     ttatttagttt  TA-rich tract