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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatattattttctagtgctaatgtaatatttgtcaacttttatttgatccactggattttttttttacctcttttgtttgatttaatgatcttttgtttgcagACAAAACTTAAAAGTGCTGTTCAACTTCAAGATCTGTTAGATGCCACACGCATGCTAGTTCCTCGTACCAG

Basic information

species Glycine max
transcript GLYMA09G37610.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 11
lower sequence: AT3G01310.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgatattattttctagtgctaatgtaatatttgtcaacttttatttgatccactggattttttttttacctcttttgtttgatttaatgatcttttgtttgcagACAAAACTTAAAAGTGCTGTTCAACTTCAAGATCTGTTAGATGCCACACGCATGCTAGTTCCTCGTACCAG
                |||  |   | |  | | |  |  || |   | ||  || |  | ||  || |  |  ||    ||  | |||         ||||||||| |||||||| ||||| || ||  | |||||||| |||||||||||| | ||| ||||||| ||||| ||
----------------gtgagaggctcaagtctttatatcttca--agttcagcttg--tcttgattaatttgcttatactgtgtcaatttctccccttttgcagACCAAACTTAAGAGTGCCGTCCAGTTGCAAGATCTATTAGATGCCACAAGAATGTTAGTTCCCCGTACAAG

upper sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 3'ss of exon 14
gtgatattattttctagtgctaa-tgtaatatttgtcaacttttatttgatccactggattttttttttacctcttttgtttgatttaatgatcttttgtttgcagACAAAACTTAAAAGTGCTGTTCAACTTCAAGATCTGTTAGATGCCACACGCATGCTAGTTCCTCGTACCAG
                |||  |    |   ||||  || |||  | ||   ||     ||     |||| |   |   || |  |||  |  || ||| ||| |||||||||||||||| ||| || ||| | |||||||| || ||||||||| | ||| || |||||||| | ||
----------------gtgagaggcttgggattttccaccttcaactttgccccgcctatagggatttt-ctgataccgtgtattttttttttccttt-tttacagACAAAACTTAAAACTGCCGTCCAATTGCAAGATCTATTGGATGCCACAAGAATGTTAATTCCTCGTGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactggattttttttttacctcttttgtttgatttaatgatcttttgtttgcagACAAAACTTAAAAGTGCTGTTCAACTTCAAGATCTGTTAGATGCCACACGCATGCTAGTTCCTCGTACCAG
                                atttaat  putative branch site (score: 4)
                                         tcttttgttt  putative PPT
                       ttttgtttgatttaat  TA-rich tract