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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctcatttttaactgagtttatatattttgttagaaatttttcttgtagtaatttgttaattttttgtactaaaaaggcttttagcaacagacactgttaaatgctactatatagatcattattcgttgtgcatcatgttggtattatttggtcctgacataaatttaccttatatgattgtatctacagGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGGAGAGAATATACTCTGCTATACTATAC

Basic information

species Glycine max
transcript GLYMA09G36570.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208190858|gb|GD989574.1|GD989574
EST:     CAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAG                         GTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAA
genomic: CAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGgtaaatctca ... gtatctacagGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAA
EST: gi|58024090|gb|CX710831.1|CX710831
EST:     CAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAG                         GTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAA
genomic: CAGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGgtaaatctca ... gtatctacagGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttggtattatttggtcctgacataaatttaccttatatgattgtatctacagGTCATGGAATTTCTCAAGTCACTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGGAGAGAATATACTCTGCTATACTATAC
                 tcctgac  putative branch site (score: 2)
 ataaatttaccttata  TA-rich tract