1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagtataaattctctttatatattctaggttcttctttgcacccatgcatgctgtttctattatacatataattggtgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG
species | Glycine max |
transcript | GLYMA09G34390.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTAEST: gi|209710487|gb|BW662023.1|BW662023
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTAEST: gi|214009173|gb|DB989889.1|DB989889
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAACAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTAEST: gi|207830340|gb|GD803320.1|GD803320
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTAEST: gi|209706566|gb|BW676114.1|BW676114
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTAEST: gi|31307413|gb|CD392616.1|CD392616
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: GAGCTGGTATAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
tgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG
ttttc CT-rich tract
aaattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtataaattctctttatatattctaggttcttctttgcacccatgcatgctgtttctattatacatataattggtgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA