1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctgactatatatttttggcatatttagcctttttcctgcatttgtttgtttagtttaaagcattattttgactctaagcaacttggttttcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTCTTTCTTGCTGCTGTAATATGGTTCATAG
species | Glycine max |
transcript | GLYMA09G33680.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCCATGTCTTTGGTGATGTGCCTTCCTCACCACTTGTTGGGGTCCTGCAG GATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTCEST: gi|192296718|gb|FG991286.1|FG991286
genomic: TCCATGTCTTTGGTGATGTGCCTTCCTCACCACTTGTTGGGGTCCTGCAGgtaacaccta ... tcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTC
EST: CCTTCCTCACCACTTGTTGGGGTCCTGCAG GATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTCEST: gi|38193727|gb|CF922933.1|CF922933
genomic: CCTTCCTCACCACTTGTTGGGGTCCTGCAGgtaacaccta ... tcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTC
EST: TCCATGTCTTTGGTGATGTGCCTTCCTCACCACTTGTTGGGGTCCTGCAG GATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTC
genomic: TCCATGTCTTTGGTGATGTGCCTTCCTCACCACTTGTTGGGGTCCTGCAGgtaacaccta ... tcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTC
tttgtttagtttaaagcattattttgactctaagcaacttggttttcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTCTTTCTTGCTGCTGTAATATGGTTCATAG
ttttgac putative branch site (score: 3)
ttttcct putative PPT
tttaaagcattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgactatatatttttggcatatttagcctttttcctgcatttgtttgtttagtttaaagcattattttgactctaagcaacttggttttcctgggcagGATCATATCAACGACTGGAGGAAAACAGCACTTTGTTTAACATCCATTTTCTTTCTTGCTGCTGTAATATGGTTCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
gctgact
- - - - - - - - - - - - - -gcctttt
- - - - - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaagca