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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgtgtattccttactccttttgtgtgtcttcatttcagccagtgctcatagcatgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT

Basic information

species Glycine max
transcript GLYMA09G31760.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31760.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 3'ss of exon 12
-------------------------------gtaaaattgtgtattccttactcc---ttttgtgtgtcttcatttca--gccagtgctcatagcatg---------tcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT
                               | || ||      |||| | | ||   |||| | | ||||| |||||  ||  |  ||  | || ||         | |  |||||||||||| || || |||||||| ||||| ||||||||||| || |  || || || || ||||||
gtgaagttgttgagttctcaagcttggttttggaagatgtctctttccctcccccaccttttttttttcttcttttcaaagcttggactgctggcctgaaagttaaatttcacagGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCCTATAGTGGACCAGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207816917|gb|GD788458.1|GD788458
EST:     ATTTCTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAAGATAG                         GGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTC
genomic: ATTTCTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAAGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTC
EST: gi|23731586|gb|BU763924.1|BU763924
EST:     ATTTCTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAAGATAG                         GGTACCCAATATCAAATTCAATGTA
genomic: ATTTCTTCTTCAAAACTGCTCCCTCTGGTCATTAATGCATCAAAAGATAGgtaaaattgt ... tgtcttgcagGGTACCCAATATCAAATTCAATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttactccttttgtgtgtcttcatttcagccagtgctcatagcatgtcttgcagGGTACCCAATATCAAATTCAATGTAGCTAAAGTGTTGCAGTCTCTCATCCCAATTGTTGATCAGTCT
 tccttac  putative branch site (score: 2)
                    ttcattt  TA-rich tract