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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtttctttttttctttctctttctctctctctcacacacacacacacaaggttgctgacactgccaatggaggtctgaaattaattcatttttctccagTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTCTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCGCCACAACACATGAATGGGCGAATGTCT

Basic information

species Glycine max
transcript GLYMA09G24970.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402839|gb|EV272652.1|EV272652
EST:     CGACTTTCTCTTCATTCTTCTAGGTTTTTGAAAACTAATCCTCATGCAAG                         TGAAATCCATATTCCAAGGAATATATCTTGCCCTGTCTCACCCATTGGAAG
genomic: CGACTTTCTCTTCATTCTTCTAGGTTTTTGAAAACTAATCCTCATGCAAGgtctgtttct ... ttttctccagTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTCTCACCCATTGGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaggttgctgacactgccaatggaggtctgaaattaattcatttttctccagTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTCTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCGCCACAACACATGAATGGGCGAATGTCT
                                        ttcatttttctcc  CT-rich tract
                               tgaaattaattcattt  TA-rich tract